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Data Backup Problems

How to Back Up Power Automate Desktop Flows Before Uninstalling

John WilsonJohn Wilson Oct 20, 2026 869 views

Question details

The user needs to back up or export their existing Power Automate Desktop flows to prevent data loss when uninstalling the MSI version and switching to the Microsoft Store version.

How to Back Up Power Automate Desktop Flows Before Uninstalling
Product
Microsoft Power Automate Desktop
Device & OS
Windows
Scenario
Uninstalling the MSI version of Power Automate Desktop and transitioning to the Microsoft Store version while preserving complex automated flows.
Observed behavior
The user is looking for a reliable and expert-approved method to export and store their flows to ensure they are available after the reinstallation.
Before you start

Ensure you are signed into your Microsoft account with an active internet connection, as Power Automate Desktop flows are natively synced to your cloud Dataverse environment.

Solution 1Recommended

Verify Cloud Sync and Export via the Power Automate Portal

Because desktop flows are saved to the Microsoft Dataverse environment linked to your account, you can verify their existence and export physical backups from the web portal.

Power Automate Desktop does not store flows exclusively on your local hard drive. Instead, it synchronizes them with your Microsoft cloud environment. Before uninstalling the desktop application, checking the web portal ensures your flows are safely synced.

1
Sign in to Power Automate

Open your web browser and sign in to the official Power Automate web portal using the same Microsoft account associated with your Power Automate Desktop app.

2
Navigate to Desktop Flows

Click on 'My flows' in the left-hand navigation menu, then select the 'Desktop flows' tab at the top of the page.

3
Verify your flows

Check the list to ensure all your complex flows are present. If they appear here, they are safely backed up in the cloud and will be available when you sign into the Microsoft Store version.

4
Export as a local package

To create a physical backup, click the three dots (More commands) next to the flow you wish to back up, select 'Export', and choose the '.zip' package option to download it to your computer.

Verify Cloud Sync and Export via the Power Automate Portal
Cloud Safety: Uninstalling the desktop application does not delete flows stored in your Microsoft Dataverse environment.
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Frequently Asked Questions

Will I lose my desktop flows if I uninstall the Power Automate Desktop MSI version?

Generally, no. Desktop flows are automatically synced and saved to the Microsoft Dataverse environment in your cloud account. However, you should always verify they are visible in the Power Automate web portal before proceeding with the uninstallation.

Can I export multiple Power Automate Desktop flows simultaneously?

Currently, Microsoft Power Automate requires you to export flows individually as .zip packages from the web portal. There is no native bulk export button for desktop flows.

What is the difference between the MSI and Microsoft Store versions of Power Automate Desktop?

The core automation features are identical. The primary difference is update management: the Microsoft Store version updates automatically in the background, while the MSI version requires manual updates or enterprise deployment tools (like SCCM).

How do I import my backed-up flows after installing the new version?

To restore an exported flow, log into the Power Automate web portal, navigate to 'My flows', click 'Import' at the top of the page, and upload the .zip file you previously exported.