PDF Editing Issues

How to Keep Original Bookmarks When Combining PDFs in Adobe Acrobat

Camila MilosovichCamila Milosovich Oct 23, 2026 869 views

Question details

The user wants to retain original bookmarks without the auto-generated filename bookmarks when merging PDF files in Adobe Acrobat.

How to Keep Original Bookmarks When Combining PDFs in Adobe Acrobat
Product
Adobe Acrobat
Device & OS
not provided
Scenario
Merging multiple PDF documents that already contain customized bookmarks.
Observed behavior
Acrobat automatically creates a new top-level bookmark for each source filename, nesting the original bookmarks underneath, without a built-in toggle to prevent this behavior.
Before you start

Ensure you have the latest version of Adobe Acrobat installed and make sure to back up your original PDF files before combining them.

Solution 1Recommended

Manually Reorganize and Delete Filename Bookmarks

The most straightforward method is to combine the files normally and then manually reorganize the bookmarks to remove the top-level filename entries.

Since Adobe Acrobat does not offer a native toggle to disable filename bookmarks during the merge process, manual adjustment is the most reliable workaround for standard users.

1
Combine PDF Files

Open Adobe Acrobat, go to 'Tools' > 'Combine Files', add your desired PDFs, and click 'Combine'.

2
Open the Bookmarks Panel

Click the 'Bookmarks' icon on the left navigation pane to view the document's new bookmark structure.

3
Move Original Bookmarks

Select the nested original bookmarks under the auto-generated filename bookmark. Click and drag them up to the top level so they are no longer nested.

4
Delete Filename Bookmarks

Once the original bookmarks are safely moved out, select the auto-generated filename bookmarks, right-click, and choose 'Delete'.

Manually Reorganize and Delete Filename Bookmarks
Avoid Deleting Parent Bookmarks Directly: Do not delete the filename bookmark while your original bookmarks are still nested inside it, as Acrobat will delete the parent and all of its nested child bookmarks together.
Manage PDFs Easily with WPS Office

Combine PDFs and Edit Bookmarks Seamlessly in WPS Office

WPS Office provides a comprehensive PDF toolkit that allows you to easily merge multiple PDF documents, manage bookmarks, and edit PDF content without unnecessary complexity.

  1. 1. Open WPS Office: Launch WPS Office and click on the 'PDF' tab on the home screen.
  2. 2. Merge PDFs: Select 'Merge PDF' from the toolkit, add the PDF files you want to combine, and click 'Merge'.
  3. 3. Adjust Bookmarks: Open the newly merged PDF, click the Bookmark icon on the left panel, and easily organize, promote, or delete any unwanted bookmarks.
Easily merge, split, and extract PDF pagesIntuitive and user-friendly bookmark management toolsFully compatible with standard Adobe PDF formatsLightweight application with a familiar ribbon interface
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Frequently Asked Questions

Why does Acrobat add filename bookmarks when combining PDFs?

Acrobat adds these top-level bookmarks by default to act as dividers, helping users quickly identify where each original document begins within the newly merged file.

Can I prevent Acrobat from creating filename bookmarks automatically?

Currently, Adobe Acrobat does not offer a built-in settings toggle to completely prevent the creation of filename bookmarks during the 'Combine Files' process.

Will deleting the top-level bookmark delete my original bookmarks?

Yes. If your original bookmarks are nested under the filename bookmark, deleting the filename bookmark will also delete all of its children. You must drag the child bookmarks out to the main level before deleting the parent.