How to Recover Missing or Deleted PDF Annotations on Mac
Question details
Highlights, notes, arrows, and other annotations have disappeared from saved PDF files on a Mac following a software update.

- Product
- PDF Reader
- Device & OS
- Mac
- Scenario
- Opening previously saved and annotated PDF textbooks to review notes, only to find the markings missing and file dates altered.
- Observed behavior
- The PDF opens successfully, but all user-added annotations are invisible or deleted. The file's 'Get Info' creation date may also appear reset to a recent date.
Make a duplicate copy of the affected PDF files immediately and stop editing the originals to prevent overwriting any hidden annotation data.
Restore the PDF via Time Machine or Cloud Version History
Retrieving an older version of the document from a backup is the most reliable method if the file was overwritten or corrupted during the update.
When system updates alter file states or creation dates unexpectedly, the original file containing the incremental annotation data might have been replaced by a fresh download or cached version. Restoring from your macOS backup system ensures you retrieve the exact file state prior to the update.
Connect your Time Machine backup drive to your Mac. Open the folder containing the affected PDF, click the Time Machine icon in the menu bar, and select 'Enter Time Machine'. Scroll back to a date before the update and click 'Restore'.
If the PDF was stored in iCloud Drive, OneDrive, Google Drive, or Dropbox, log into the service's web interface. Locate the file, right-click it, and select 'Version History' or 'Restore previous versions' to revert to a state where annotations were intact.

Open the File in Different PDF Readers
Sometimes annotations are not permanently deleted but are rendered invisible due to software compatibility issues after an update.
Annotate and Protect Your PDFs Safely with WPS Office
Prevent future annotation loss by managing your documents with WPS Office for Mac. It offers robust PDF viewing and editing tools, ensuring your highlights and notes are securely embedded and fully compatible across different platforms.
- 1. Open your PDF Document: Launch WPS Office on your Mac, click 'Open', and select your PDF textbook or file.
- 2. Apply Annotations: Navigate to the 'Comment' tab at the top to access various tools like highlighters, underline, shapes, and sticky notes.
- 3. Save and Sync: Click the 'Save' icon or press Cmd + S. You can also enable WPS Cloud to automatically back up your annotated documents.

Frequently Asked Questions
Why did my PDF annotations disappear after a Mac update?
System or app updates can sometimes alter default reading preferences, reset temporary caching folders, or change how a specific app renders layered elements like highlights and notes, making them appear missing.
Can I recover annotations if the 'Get Info' creation date has changed?
If the 'Get Info' creation date is newer than when you started annotating, the system likely replaced your file with a new, blank copy. In this case, you must retrieve an older version from Time Machine or a cloud backup to recover your notes.
How do I prevent my highlights from disappearing in the future?
Always explicitly save your document (using 'Save As') rather than relying on auto-save or temporary cache. For critical files, consider exporting a 'flattened' copy of the PDF, which permanently merges the annotations into the document pages.




