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OneDrive File Issues

How to Fix OneNote Notebooks Appearing Empty and Failing to Sync

Maira MehtabMaira Mehtab Sep 20, 2026 868 views

Question details

The user needs to restore missing content in the OneNote desktop application and resolve a synchronization failure that causes new sections to disappear.

Product
Microsoft OneNote
Device & OS
not provided
Scenario
Viewing and synchronizing OneNote notebooks using the desktop client.
Observed behavior
Notebooks appear empty in the desktop app despite being accessible online. Creating new sections results in them being deleted after synchronization fails, commonly accompanied by error 0xE00009C8.
Before you start

Before troubleshooting the desktop application, log into OneNote for the Web to verify that your notebook data is intact and successfully saved online.

Solution 1Recommended

Check Notebook Sync Status and Force Synchronization

Manually checking the sync status helps identify specific errors and force the notebook to synchronize with the cloud.

Sometimes the automatic synchronization process pauses or encounters a temporary block. Manually forcing the sync can push pending changes through and reveal specific error codes like 0xE00009C8.

1
Open the View Sync Status Window

Launch the OneNote desktop application. Click on 'File' in the top ribbon menu and select 'Info'. Click on the 'View Sync Status' button to open the Shared Notebook Synchronization dialog.

2
Force the Sync

Locate the problematic notebook in the list and click 'Sync Now' next to it to force the synchronization process.

Monitor for Errors: If the sync fails, take note of the exact error code displayed in the status window to help guide further troubleshooting.
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Frequently Asked Questions

What does OneNote sync error 0xE00009C8 mean?

Error 0xE00009C8 typically occurs when the OneNote desktop application struggles to communicate with OneDrive servers due to network issues, a corrupted local cache, or server-side throttling, which prevents new changes from syncing to the cloud.

How do I recover a OneNote section that disappeared after syncing?

Check the 'Deleted Notes' section under the 'View' tab in the desktop application. Additionally, log into OneNote for the Web to see if the section successfully synced to the cloud before it disappeared from the local application.

Will closing a OneNote notebook delete my unsynced data?

Yes, if you close a notebook that has not successfully synchronized with OneDrive, any unsynced changes or new sections made locally will be permanently lost. Always copy your unsynced notes to a separate document as a backup before closing the notebook.

How do I clear the OneNote cache to fix sync issues?

Ensure OneNote is completely closed. Press Windows + R, type '%localappdata%\Microsoft\OneNote', and press Enter. Open the folder corresponding to your software version (e.g., '16.0') and delete the 'cache' folder. The cache will rebuild automatically when you restart OneNote.