Microsoft 365 Migration

Fix SharePoint Migration Tool Missing Files After Success

Steve KSteve K Oct 21, 2026 869 views

Question details

The user needs to understand why certain files are skipped during a migration to Microsoft 365 and how to resolve the issue to ensure all data is transferred.

How to Fix SharePoint Migration Tool Missing Files After a Successful Run
Product
SharePoint Migration Tool
Device & OS
not provided
Scenario
Migrating files and folders to SharePoint Online or Microsoft 365 using the official migration tool.
Observed behavior
The migration tool completes the process and reports success, but specific files and folders are missing in the destination SharePoint environment.
Before you start

Ensure you have access to the migration log files generated by the SharePoint Migration Tool and sufficient permissions to rename or move the source files.

Solution 1Recommended

Review Migration Reports and Correct File Restrictions

Identify the skipped files using the migration logs, then correct their names, path lengths, or sizes to comply with SharePoint Online restrictions before running the migration again.

SharePoint Online enforces strict rules regarding file formatting. If a file violates these rules, the migration tool will skip it to prevent server errors, yet it will still mark the overall migration process as successful.

1
Open the Migration Report

Navigate to the folder where your SharePoint Migration Tool saves its logs. Open the 'ItemFailureReport.csv' or 'ScanSummary' file to view the details of the migration.

2
Identify Skipped Files

Filter the report to show skipped or failed items. Note the source paths and the specific error codes provided for each missing file.

3
Fix File and Folder Names

Locate the affected files on your local drive. Remove unsupported characters such as asterisks, colons, question marks, and angle brackets from the file and folder names.

4
Shorten Long File Paths

If the report indicates a path length error, flatten your folder structure or shorten folder names to ensure the entire URL path stays well under the 400-character limit.

5
Run an Incremental Migration

Once all problematic files have been corrected, launch the SharePoint Migration Tool and re-run the migration job to safely transfer the previously skipped files.

Review Migration Reports and Correct File Restrictions
File Size and Connectivity: Ensure no individual file exceeds the maximum file size limit for SharePoint Online (currently 250 GB) and verify your network connection is stable to prevent connectivity timeouts.
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Frequently Asked Questions

Why does the SharePoint Migration Tool report success if files are missing?

The tool evaluates the overall migration job. If the process finishes without a fatal crash, it reports success, treating files that violate SharePoint policies (like invalid names) as successfully skipped rather than failed.

What characters are invalid in SharePoint Online file names?

SharePoint Online restricts certain characters in file and folder names. You must remove characters such as " * : < > ? / \ | and leading or trailing spaces before migrating.

How do I fix the SharePoint file path length limit?

SharePoint Online has a URL path limit of 400 characters. To resolve this, you should flatten deep folder structures, shorten the names of parent folders, or migrate the data directly into a top-level document library.

Can a dropped network connection cause files to be skipped?

Yes, temporary network timeouts or connectivity interruptions during the migration process can cause the tool to skip files. Running the migration again typically resolves these network-related omissions.