Google Workspace Migration

How to Fix Missing Email Folders After Migrating from Google Workspace to Microsoft 365

Phi Hung VoPhi Hung Vo Oct 28, 2026 869 views

Question details

Users need to recover missing emails and folder hierarchies after transitioning to Microsoft 365.

Fix Missing Email Folders After Google Workspace Migration
Product
Microsoft 365
Device & OS
not provided
Scenario
A migration from Google Workspace to Microsoft 365 has been completed, but the initial migration batch cannot be re-run to fetch missed data.
Observed behavior
Users can successfully access their new Microsoft 365 accounts, but several emails and folder structures are missing, likely due to IMAP migration limitations.
Before you start

Ensure you have global administrator or compliance administrator permissions in Microsoft 365 to access the Microsoft Purview compliance portal and perform bulk PST imports.

Solution 1Recommended

Import Missing Mailbox Data using PST Files in Microsoft Purview

Export the missing Google Workspace emails to a PST file and use the Microsoft Purview Import service to securely upload them into Exchange Online without creating duplicates.

An IMAP-based migration often fails to transfer specific custom folder structures, labels, and certain email statuses from Google Workspace. Because the initial migration batch cannot be re-run, manually exporting the omitted data into a PST format and uploading it via Microsoft Purview is the most reliable recovery method.

1
Export missing data to PST

Use Google Workspace export tools or connect the original account to a desktop client like Outlook to export the missing emails and folders into a standard .pst file.

2
Access Microsoft Purview

Log in to the Microsoft Purview compliance portal with administrator credentials and navigate to Data lifecycle management > Microsoft 365 > Import.

3
Create a new import job

Click on 'New import job', provide a recognizable name for the batch, and select the 'Upload your data' option.

4
Upload the PST file

Follow the provided on-screen network upload instructions to securely upload your PST files to the provided Azure Storage location, then create and upload a PST Import mapping file to link the data to the correct Exchange Online mailboxes.

5
Start the import process

Review your mapped settings and initiate the import process. The system will process the PST file and automatically skip duplicate items that already exist in the target mailbox.

Import Missing Mailbox Data using PST Files in Microsoft Purview
Automatic Duplicate Prevention: The Microsoft Purview PST import process checks for duplicates by default. It will not copy an item if a matching email already exists in the target folder or archive.
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Frequently Asked Questions

Why did the initial IMAP migration miss some of my Google Workspace folders?

IMAP migrations only sync basic email data and standard folders. Custom labels, complex folder hierarchies, and non-email data in Google Workspace are often omitted during an IMAP sync.

Will importing a PST file overwrite my existing emails in Microsoft 365?

No. The Microsoft Purview Import service includes a built-in duplicate check. If an email already exists in the target mailbox or archive, it will be skipped rather than overwritten or duplicated.

Can I re-run the original Google Workspace migration batch instead of using PST files?

In most cases, once a migration batch has been finalized or if it encountered specific unrecoverable errors during the sync, re-running the exact same batch is not possible. A supplemental PST import is the recommended fallback.

Do I need a separate Azure subscription to upload PST files via network upload?

No, Microsoft provides a temporary, secure Azure Storage location specifically for the import process as part of your Microsoft 365 subscription when using the Purview compliance portal.