MFA Security Issues

How to Disable Microsoft Authenticator Prompts for an Organization

Huda QurayshiHuda Qurayshi Oct 21, 2026 868 views

Question details

Users within an organization continue to receive Microsoft Authenticator setup and approval prompts even after multifactor authentication (MFA) appears to have been disabled.

How to Disable Microsoft Authenticator Prompts for an Organization
Product
Microsoft 365 / Entra ID
Device & OS
not provided
Scenario
Administrators are trying to disable MFA or specifically the Microsoft Authenticator requirement for their tenant's users.
Observed behavior
The Microsoft Authenticator app continues to prompt users for authentication or setup during sign-in despite organizational attempts to turn off MFA.
Before you start

Ensure you have Global Administrator or Security Administrator privileges in your Microsoft Entra ID (formerly Azure AD) tenant before modifying organizational authentication policies.

Solution 1Recommended

Review Entra ID Security Defaults and Conditional Access Policies

Tenant-wide Security Defaults or Conditional Access policies may override individual user MFA settings, causing continuous Authenticator prompts.

Microsoft automatically enables Security Defaults for many tenants, which mandates the use of the Microsoft Authenticator app. If your organization relies on custom access rules, you may need to disable Security Defaults and check your Conditional Access policies.

1
Check Security Defaults

Log in to the Microsoft Entra admin center. Navigate to 'Identity' > 'Overview' > 'Properties' and click 'Manage security defaults'. Set it to 'Disabled' if you intend to manage security manually.

2
Access Conditional Access

Go to 'Protection' > 'Conditional Access' in the left-hand navigation menu.

3
Review Active Policies

Look for active policies that require multifactor authentication or specifically mandate strong authentication strengths. Modify or disable these policies for the affected user groups.

Review Entra ID Security Defaults and Conditional Access Policies
Security Warning: Disabling Security Defaults or Conditional Access policies significantly lowers your tenant's security posture. Ensure alternative security measures are in place.
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Frequently Asked Questions

Why are users still prompted for Authenticator after I disabled per-user MFA?

Even if legacy per-user MFA is set to 'Disabled', tenant-level settings like Microsoft Entra Security Defaults or active Conditional Access policies will override individual settings and enforce multifactor authentication.

Can I disable the Microsoft Authenticator app but keep SMS authentication?

Yes. In the Microsoft Entra admin center, navigate to Protection > Authentication methods > Policies. From there, you can disable the Microsoft Authenticator method entirely while leaving other methods like SMS or Voice enabled.

What is a registration campaign in Microsoft 365?

A registration campaign is an administrative feature that actively prompts and nudges users to set up higher-security authentication methods (like the Microsoft Authenticator app) during their regular sign-in flow.

How do I remove obsolete Authenticator app registrations for a user?

Go to the Entra admin center, search for the specific user, and navigate to their 'Authentication methods' blade. From there, you can view and revoke or delete old Microsoft Authenticator device registrations.