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MFA Security Issues

How to Stop Microsoft Authenticator Prompts When MFA Is Disabled

Nimra MalikNimra Malik Oct 10, 2026 868 views

Question details

Users want to bypass the Microsoft Authenticator setup screen that appears during sign-in, even though multi-factor authentication (MFA) is turned off in the admin center.

How to Stop Microsoft Authenticator Prompts When MFA Is Disabled
Product
Microsoft 365 / Entra ID
Device & OS
not provided
Scenario
Signing into Microsoft 365 with newly created user accounts.
Observed behavior
Users are continuously prompted to set up the Microsoft Authenticator app, and no SMS authentication alternative is presented, despite MFA being disabled for the tenant.
Before you start

Ensure you have Global Administrator or Security Administrator privileges in the Microsoft Entra admin center before attempting to modify tenant-wide authentication settings.

Solution 1Recommended

Check and Disable Entra Security Defaults

Security Defaults automatically enforce MFA for all users, overriding individual or conditional access settings. Disabling this global setting is often the primary fix.

Microsoft enables Security Defaults on all new tenants by default to protect accounts. This setting mandates the use of the Microsoft Authenticator app and will ignore per-user MFA statuses.

1
Access the Entra Admin Center

Sign in to the Microsoft Entra admin center (entra.microsoft.com) as a Security Administrator or Global Administrator.

2
Navigate to Properties

From the left-hand menu, expand 'Identity', click on 'Overview', and then select 'Properties'.

3
Manage Security Defaults

Scroll to the bottom of the Properties page and click on the 'Manage security defaults' link.

4
Disable the Setting

In the side panel, toggle the setting from 'Enabled' to 'Disabled (not recommended)'. Select a reason for disabling from the dropdown menu, and click 'Save'.

Check and Disable Entra Security Defaults
Security Consideration: Disabling Security Defaults removes baseline protections. It is highly recommended to configure custom Conditional Access policies to secure your environment if you choose to bypass these defaults.
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Frequently Asked Questions

Why does Microsoft prompt for Authenticator even when I disable per-user MFA?

Microsoft enables 'Security Defaults' for all new tenants to enforce baseline security. This global tenant setting overrides legacy per-user MFA configurations, forcing all users to register for the Microsoft Authenticator app within 14 days of their first sign-in.

How can I allow users to authenticate via SMS text instead?

You must configure the 'Authentication methods' policy in Microsoft Entra ID. Ensure the 'SMS' method is enabled and targeted to the appropriate users. Note that 'Security Defaults' heavily prioritize the Authenticator app, so you may need to disable defaults and use Conditional Access to offer SMS.

Will removing app passwords stop the Authenticator prompt?

Removing obsolete app passwords helps force modern authentication and clears out legacy security conflicts, but it does not stop the registration prompt by itself. You still need to address the registration campaign or Security Defaults that are triggering the setup requirement.