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OneDrive File Issues

How to Sync Multiple Computers to Separate OneDrive Folders

Maira MehtabMaira Mehtab Sep 22, 2026 868 views

Question details

The user wants to set up multiple laptops to back up and sync their specific files to OneDrive without merging or duplicating the default Desktop, Documents, and other libraries across all devices.

Product
OneDrive
Device & OS
not provided
Scenario
Setting up file synchronization for multiple computers using a single OneDrive account.
Observed behavior
By default, OneDrive often merges Desktop, Documents, and other system libraries, causing files from one computer to automatically appear on all other synced computers.
Before you start

Ensure you are logged into the same OneDrive account on all your computers. Before proceeding, open OneDrive settings and disable the 'PC Folder Backup' feature for Desktop, Documents, and Pictures if you do not want them automatically merged across your devices.

Solution 1Recommended

Use Custom Folders and Adjust OneDrive Sync Settings

Create custom device-specific folders outside the default Windows libraries, and use the 'Choose folders' feature to prevent them from downloading to your other computers.

To prevent OneDrive from treating all your computers as a single device, you need to stop it from backing up the default system libraries. Instead, you can manually organize your files into dedicated folders for each computer directly within the main OneDrive directory.

1
Turn off PC Folder Backup

Click the OneDrive cloud icon in your system tray, click the gear icon to open Settings, navigate to the 'Sync and backup' tab, and click 'Manage backup'. Toggle off the backup for Desktop, Documents, and Pictures to stop automatic merging.

2
Create computer-specific folders

Open your OneDrive folder in File Explorer. Manually create separate folders for each device, such as 'Laptop A Files' and 'Laptop B Files'.

3
Move files to the new folders

Relocate the files you want to sync from your default Windows libraries into these newly created custom folders.

4
Select folders to sync

On each computer, go back to OneDrive Settings, click 'Account', and select 'Choose folders'. Uncheck the custom folders belonging to your other computers so they do not download locally to the current machine.

5
Enable Files On-Demand

In the OneDrive settings, ensure that 'Files On-Demand' is enabled. This ensures that any unselected or online-only folders do not consume storage space on your local hard drive.

Important Note on Hidden Folders: When you uncheck a folder in 'Choose folders', it will no longer be visible in File Explorer on that computer, but it remains securely backed up in your online OneDrive account.
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Frequently Asked Questions

Why are my Desktop files showing up on both of my laptops?

This happens because OneDrive's 'PC Folder Backup' feature is likely enabled on both computers. It merges the Desktop, Documents, and Pictures folders into the cloud. To separate them, you need to turn off this backup feature in OneDrive settings on both devices.

What does the Files On-Demand feature do in OneDrive?

Files On-Demand allows you to see all your files in the OneDrive folder without having to download them to your local hard drive. Files stored as 'online-only' take up virtually zero space on your computer until you open them or choose to keep them locally.

Can I rename my computer's default Desktop folder to sync it separately?

No, renaming default Windows library folders like Desktop or Documents can cause system errors. It is better to create custom folders directly within the main OneDrive directory for each computer and move your specific files there.

Will unchecking a folder in 'Choose folders' delete it from OneDrive?

No, unchecking a folder in the 'Choose folders' menu only hides it in File Explorer and removes the local copy from that specific computer. The files remain safe online in your OneDrive account and can still be accessed via a web browser or from your other synced devices.