Update & Upgrade Problems

Fix Visio and Project 2021 Disappearing After Microsoft 365 Update

John WilsonJohn Wilson Nov 3, 2026 870 views

Question details

The user needs to prevent retail versions of Visio Professional 2021 and Project Professional 2021 from being automatically uninstalled during subscription-based Microsoft 365 application updates.

Fix Visio and Project 2021 Disappearing After Microsoft 365 Update
Product
Microsoft 365, Visio 2021, Project 2021
Device & OS
Windows
Scenario
Updating subscription-based Microsoft 365 apps on a computer that also has retail installations of Visio and Project.
Observed behavior
Visio Professional 2021 and Project Professional 2021 silently disappear or get uninstalled after Microsoft 365 completes its update process.
Before you start

Ensure you have your Microsoft account login details and the product keys for Visio Professional 2021 and Project Professional 2021 ready, as you may need to reinstall the standalone applications after troubleshooting.

Solution 1Recommended

Perform a Clean Boot and Test a New User Profile

A Windows clean boot eliminates background software conflicts, while a new user profile helps identify if account corruption is triggering the aggressive uninstallation during Microsoft 365 updates.

Conflicting third-party services or a corrupted local Windows profile can interfere with the Microsoft Click-to-Run update mechanism, mistakenly flagging standalone retail products for removal.

1
Open System Configuration

Press the Windows Key + R to open the Run dialog box. Type 'msconfig' and press Enter to launch the System Configuration utility.

2
Disable Non-Microsoft Services

Navigate to the 'Services' tab, check the box for 'Hide all Microsoft services' at the bottom, and then click the 'Disable all' button.

3
Disable Startup Items

Switch to the 'Startup' tab and click 'Open Task Manager'. In the Task Manager, right-click and disable all enabled startup items, then close Task Manager.

4
Restart and Test

Click 'OK' in the System Configuration window and restart your computer. Once rebooted, trigger the Microsoft 365 update to see if Visio and Project remain intact.

5
Create a New User Profile (If Needed)

If the issue persists, go to Windows Settings > Accounts > Family & other users. Click 'Add someone else to this PC' to create a new local user account, log into it, and test the update process again.

Perform a Clean Boot and Test a New User Profile
Gathering Diagnostic Details: If the applications continue to disappear, open any Office app, go to File > Account, and record your exact Microsoft 365, Visio, and Project build versions. You will need this data if you decide to escalate the issue to Microsoft Support.
Free Microsoft Office alternative

Switch to WPS Office for a Stable Editing Experience

If Microsoft 365 updates continuously conflict with your standalone software and cause unexpected uninstallations, consider switching to WPS Office. It provides a highly compatible, all-in-one productivity suite without the aggressive background updates that interfere with other programs.

  1. 1. Download the Installer: Visit the official WPS Office website and click the Free Download button.
  2. 2. Install WPS Office: Run the downloaded executable file and follow the straightforward on-screen instructions to install the suite.
  3. 3. Open Your Documents: Launch WPS Office and instantly open your existing .docx, .xlsx, or .pptx files to resume your work without compatibility issues.
No forced background updates that remove other installed softwareFully compatible with Microsoft Word, Excel, and PowerPoint formatsLightweight installation with minimal system resource consumptionFree to download and use with a highly familiar user interface
microsoft office alternative - wps office

Frequently Asked Questions

Why do Visio and Project 2021 disappear after a Microsoft 365 update?

This issue typically occurs due to a conflict within the Click-to-Run installation engine. When subscription-based Microsoft 365 updates, it may incorrectly identify retail (perpetual) installations of Visio or Project sharing the same installation path as obsolete or conflicting, thereby removing them automatically.

How do I reinstall Visio or Project 2021 if they disappear?

You can restore your missing applications by logging into your Microsoft Account dashboard at account.microsoft.com. Navigate to the 'Services & subscriptions' section, locate your Visio 2021 or Project 2021 license, and click the 'Install' button to reinstall the software.

Can I temporarily disable automatic Microsoft 365 updates to prevent this?

Yes. Open any Microsoft 365 application, such as Word or Excel, and go to File > Account. Click on 'Update Options' next to Office Updates, and select 'Disable Updates'. Note that this will stop all security and feature updates until you manually re-enable them.